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SPATIAL AUTOENCODER (spatialAE)

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SPATIAL AUTOENCODER (spatialAE)

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Table of contents
- SPATIAL AUTOENCODER (spatialAE): A scalable framework for training autoencoders for highly multiplexed tissue images.
Getting Started
SpatialAE Functions
SpatialAE Functions
- SpatialAE Preprocessing
  SpatialAE Preprocessing
  - Generate 2D patches
  - Generate 3D patches
- Build SpatialAE Model
  Build SpatialAE Model
  - Train 2D images
  - Train 3D images
- Visualization
  Visualization
  - visualizeImages
- Helper Functions
  Helper Functions
  - extractEmbedding
Tutorials
Tutorials
- SpatialAE Demo

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SPATIAL AUTOENCODER (spatialAE): A scalable framework for training autoencoders for highly multiplexed tissue images.¶